ADAT3

Chr 19AR

adenosine deaminase tRNA specific 3

Also known as: FWP005, MRT36, MST121, MSTP121, NEDBGF, S863-5, TAD3

The protein functions as the regulatory subunit of a tRNA-specific adenosine deaminase complex that modifies tRNA anticodons to enable flexible genetic code reading and is required for proper neuronal migration during brain development. Mutations cause autosomal recessive neurodevelopmental disorder with brain abnormalities, poor growth, and dysmorphic facies, often presenting with intellectual disability and strabismus. The gene shows moderate tolerance to loss-of-function variants (LOEUF 1.459), consistent with recessive inheritance where heterozygous carriers are typically unaffected.

OMIMResearchSummary from RefSeq, OMIM, UniProt
ARLOEUF 1.461 OMIM phenotype
Clinical SummaryADAT3
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Gene-Disease Validity (ClinGen)
intellectual disability-strabismus syndrome · ARModerate

Moderate evidence — consider for supplementary testing

Population Constraint (gnomAD)
Low constraint (pLI 0.01) — loss-of-function variants are relatively tolerated in the population.

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
1.46LOEUF
pLI 0.006
Z-score 0.80
OE 0.65 (0.321.46)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint
-0.42Z-score
OE missense 1.08 (0.971.20)
235 obs / 217.5 exp
Tolerant

Tolerant to missense variation

Observed / Expected Ratios
LoF OE0.65 (0.321.46)
00.351.4
Missense OE1.08 (0.971.20)
00.61.4
Synonymous OE0.97
01.21.6
LoF obs/exp: 4 / 6.1Missense obs/exp: 235 / 217.5Syn Z: 0.21

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

ADAT3 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

3D Protein StructureAlphaFold

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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Clinical Literature
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